rcaloger/skewer1

The docker skewer1 can be run with the following commands:

For pair ends reads:
sudo docker pull docker.io/rcaloger/skewer1
sudo docker run -v /host/directory:/container/directory -d docker.io/rcaloger/skewer1 sh /bin/trim2.sh /host/directory/fastq_folder 5'adapter 3'adapter read_R1.fastq.gz read_R2.fastq.gz
e.g:
sudo docker pull docker.io/rcaloger/skewer1
sudo docker run -v /data/scratch/:/data/scratch -d docker.io/rcaloger/skewer1 sh /bin/trim2.sh /data/scratch/1864p22 GTCTCGTGGGCTCGG TCGTCGGCAGCGTC read_R1.fastq.gz read_R2.fastq.gz